BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002H01SP1|AL425027
(562 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1003 0.0
>3x_Contig1265
Length = 8324
Score = 1003 bits (500), Expect = 0.0
Identities = 538/552 (97%), Gaps = 3/552 (0%)
Strand = Plus / Minus
Query: 1 tgagatctcccccactttgtgaacatttcttggaatgataagcwaatkctgtaggccatt 60
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 2237 tgagatctcccccactttgtgaacatttcttggaatgataagcaaatactgtaggccatt 2178
Query: 61 ttacttcatcaaacaaaatccactgattagtgaaagcdgttctgcgactctcatacaggt 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2177 ttacttcatcaaacaaaatccactgattagtgaaagcagttctgcgactctcatacaggt 2118
Query: 121 atgtcgaattcaacaaacacagaaaaagacctaatacctctggttgctccgctcaacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 atgtcgaattcaacaaacacagaaaaagacctaatacctctggttgctccgctcaacact 2058
Query: 181 ttaaattacatccatcaaggtcagaagcttattgataagcagatgacaaccactcaagct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ttaaattacatccatcaagatcagaagcttattgataagcagatgacaaccactcaagct 1998
Query: 241 tatmaattgatgacaagmaacgwacctttgtggttggrtamggcattcaaaacaagagat 300
||| ||||||||||||| |||| |||||||||||||| || |||||||||||||||||||
Sbjct: 1997 tatcaattgatgacaagcaacgtacctttgtggttggatacggcattcaaaacaagagat 1938
Query: 301 tttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggttctgcgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 tttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggttctgcgaag 1878
Query: 361 -cgctaaaagtaggcgataaagcagatttcttcgacgttgtcaaagtgtcggatgatgaa 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 ccgctaaaagtaggcgataaagcagatttcttcgacgttgtcaaagtgtcggatgatgaa 1818
Query: 420 ctatttttgaagtctactgacaagcatttaagtgtattggatagcattgcdaatcaagaa 479
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1817 ctatttttgaagtctactgacaagcatttaagtgtattgg-tagcattgctaatcaagaa 1759
Query: 480 ccacgatgacctgagagaatgaattcagaatagccaccagtgtggttacctacaattttt 539
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1758 ccacgatgacctgaga-aatgaattcagaatagccaccagtgtggtcacctacaattttt 1700
Query: 540 ttggcagggtgt 551
||||||||||||
Sbjct: 1699 ttggcagggtgt 1688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3346
Number of Sequences: 1807
Number of extensions: 3346
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 562
length of database: 10,358,551
effective HSP length: 16
effective length of query: 546
effective length of database: 10,329,639
effective search space: 5639982894
effective search space used: 5639982894
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.8 bits)